Provides both a programmer’s API and an end-user’s toolkit for handling BAM files

A Bayesian genetic variant detector designed to find small polymorphisms

A tool and pipeline management system to effectively deploy tools developed in the MarthLab as well as other third-party tools

A graph-based tool which performs local realignment to adjudicate and validate variant calls

iobio uses immediate visual feedback to make understanding complex genomic datasets more intuitive, and analysis more interactive

a new approach to variant detection that does not rely on mapping or whole genome assembly methods

Computational Framework for reconstructing tumor clone structures